Protein datasets

The full protein dataset is available in FASTA format (link downloads gzipped file from JaponicusDB).

The protein data directory contains assorted data (see the README for file formats):

• PeptideStats.tsv - Predicted molecular weight (kDa), predicted pI, charge, length (residues), codon adaptation index (CAI)
• protein_domains_and_features.tsv - Protein features such as domains and family assignments
• aa_composition.tsv - Amino acid composition
• transmembrane_domain_coords_and_seqs.tsv - Sequences and coordinates for transmembrane domains

See also the JaponicusDB protein modification annotations.